Run Error: Segmentation fault - invalid memory reference

[Josefine]

Hi,
I am trying CESM2.2.
I created case with compset of B1850 and f09xg17.
My machine is not supported (ported), with linux, GCC 4.9.4 and mvapich2-2.2.
Build has successed. But run failed.
I have attached the 3 logs.
I guess sth wrong with the input of the file? But ‘check_input_data’ showed nothing wrong
Thanks a lot for your help!

 

[cacraig]

I checked out tag release-cesm2.2.0 on NCAR's cheyenne computer and ran ./create_newcase --compset B1850 --res f09_g17 --case test_b1850; ./case.setup; ./case.build; ./case.submit. The job ran past the atmospheric initialization phase where your job stops (and I then halted it by hand as I did not want to waste the resources).

Make sure that you have not run out of disk space in either the location where you are running or the inputdata location as running out of disk space can give random errors.

To get more information on a rebuild/run, try doing an ./xmlchange DEBUG=TRUE before you do the case.build. That may actually give you a traceback which will give a better idea of what is going wrong.

 

[Josefine]

I checked out tag release-cesm2.2.0 on NCAR's cheyenne computer and ran ./create_newcase --compset B1850 --res f09_g17 --case test_b1850; ./case.setup; ./case.build; ./case.submit. The job ran past the atmospheric initialization phase where your job stops (and I then halted it by hand as I did not want to waste the resources).

Make sure that you have not run out of disk space in either the location where you are running or the inputdata location as running out of disk space can give random errors.

To get more information on a rebuild/run, try doing an ./xmlchange DEBUG=TRUE before you do the case.build. That may actually give you a traceback which will give a better idea of what is going wrong.

Thanks for your advice! I'll take a try!

 

[dayon]

Thanks for your advice! I'll take a try!

Have you solved the problem? I encountered the same problem.
The log show the information "Program received signal SIGSEGV: Segmentation fault - invalid memory reference." Could you give me some suggestions? Thanks in advance.

 

[Josefine]

Have you solved the problem? I encountered the same problem.
The log show the information "Program received signal SIGSEGV: Segmentation fault - invalid memory reference." Could you give me some suggestions? Thanks in advance.

Hi Dayon,
I have solved the problem. In my case this is a problem related to environent, the supporting softwares（I mean pnetcdf netcdf and so on）....In my problem is, pnetcdf is not built based on the netcdf, and I installed netcdf and pnetcdf by myself and checked the path when installing. Hope this work for you!

 

[dayon]

Thanks for your reply, I wil check my pnetcdf and netcdf.