runtime error: ***/cesm.exe: symbol lookup error: ***/cesm.exe: undefined symbol: netcdf_mp_nf90_open_

[tauhonson@pku_edu_cn]

Hello, everyoneI was running CESM1.2.1 with intel compiler. I could successfully compile the cesm.exe. But when I qsub ***.run, the error mesage was:***/cesm.exe: symbol lookup error: ***/cesm.exe: undefined symbol: netcdf_mp_nf90_open_I modifed in Tools/Makefile to added -lnetcdff after -lnetcdf, if not, the compilation would not finish successful.I tried the same component setting in CESM1.1.2, it worked smoothly.I could appreciate it anyone do me a favor.

 

[jedwards]

If the compile completed without error but you got this message at runtime - it's probably a shared library issue  - the netcdf library directory needs to be in the LD_LIBRARY_PATH.   There is a bug fix update of 1.2.1 - 1.2.2 which may solve this problem.   You might also look at the link line of both builds and see if you can spot the difference - it's in the ccsm.bldlog file. 

 

[tauhonson@pku_edu_cn]

Thanks very much for replying.But where can I read about and download such bug fixes?And also pgi stuff with old netcdf version could not compile cesm1.2.1, but could compile cesm1.1.2 (also could run well).

 

[jedwards]

Get the latest release here http://www.cesm.ucar.edu/models/cesm1.2/ 

 

[tauhonson@pku_edu_cn]

HelloI was trying to build CESM1.2.2 with intel stuff. But I failed to compile mct. The error message was:checking whether the C compiler works... noconfigure: error: in `/home/tauhonson/cesm_run/1_2_2/FMOZ_trial/intel/mpich/nodebug/nothreads/mct':configure: error: C compiler cannot create executablesThe same configuration ( including the same mpicc and icc, I used mpich2.1.5 compiled with intel) worked well when building CESM1.2.1.  

 

[jedwards]

Look for the error in /home/tauhonson/cesm_run/1_2_2/FMOZ_trial/intel/mpich/nodebug/nothreads/mct/config.log