'shr_pio_getindex :: compid out of allowed range'

[yfang]

Hi, Does any one know this error: 'shr_pio_getindex :: compid out of allowed range'? It showed up in the atm.log file.

 

[yfang]

It occurred at line 171 in share/src/shr_pio_mod.F90 for component ATM, which has the mesh and mask file fv0.9x1.25_141008_po lemod_ESMFmesh.nc. My compset is I2010Clm50Sp and grid is f09_g17. I printed out "size(io_compname)" and it's 0.

 

[yfang]

cesm.exe 0000000000F3DA3E dshr_mod_mp_dshr_ 291 dshr_mod.F90
cesm.exe 000000000056F6C2 atm_comp_nuopc_mp 420 atm_comp_nuopc.F90

 

[yfang]

cesm.exe 0000000000F3DA3E dshr_mod_mp_dshr_ 291 dshr_mod.F90
cesm.exe 000000000056F6C2 atm_comp_nuopc_mp 420 atm_comp_nuopc.F90

ESMF_SUCCESS = 0

 

[yfang]

ESMF_SUCCESS = 0

Not sure if it's related to ESMF, but the code won't compile if "USE_ESMF_LIB" is FALSE.

 

[oleson]

We will need the information requested here in order to help you, thanks:

Information to include in help requests

When you are posting to the forums because you want help with an issue, please include as much of the following information as possible. Please read the following before submitting a help request: Check the CESM support policy, and particularly the list of currently-supported versions at the...

bb.cgd.ucar.edu

 

[yfang]

@oleson Thanks for the information. Please find the description in the attached. I built ESMF v8.4.1 using intel compiler and esmf_comm is intelmpi. The script to create the case is in the attachment too.

 

[oleson]

I'm probably going to move this to the porting forum but it would be helpful if you could attach the log files you get when you try to run the simulation.
Has the model been ported to "compy"?

 

[yfang]

I don't think so. The log files are attached.

 

[yfang]

The log files are attached.

 

[oleson]

I don't see any log files attached.

 

[oleson]

Whoops, now I see them, sorry

 

[oleson]

Thanks for all of that information. I setup and successfully ran the same case on our machine. The line numbers in the traceback don't quite match up appropriately with the lines of code that I see in ctsm5.1.dev122. For example, the line number in the traceback for atm_comp_nuopc.F90 points to a blank line, but right above that it is initializing the mesh, as you noted. My only suggestion right now is to make sure the mesh file exists, is not a netCDF4 file, and is not corrupted.

 

[yfang]

Thanks so much for looking into this. I added some print statements in the code and messed up the line numbers. The exact location is line 420 in atm_comp_nuopc.F90 and line 291 in dshr_mod.F90.
The mesh file exists. It is cdf5 format and it's not corrupted. Is it correct?

 

[yfang]

Could you take a look at the xml files in the attached to see if there is anything wrong? Thank you!

 

[oleson]

I took a look and don't see anything obviously wrong, but I'm far from an expert on porting to other machines. I'm going to transfer this to the porting forum to see if they can help. You might first try the porting guide if you haven't already done so:

6. Porting and validating CIME on a new platform — CIME master documentation

 

[jedwards]

Try placing this file in your SourceMods/src.share directory, recompile and rerun
(remove the .txt extension - the file name should be shr_pio_mod.F90)

 

[yfang]

@jedwards Thanks for the code. The error is:
ERROR: shr_pio_getindex :: compname=ATM not found in
/compyfs/d3m045/e3sm_scratch/wtd/cesm_wtd_g/I2000Clm50Sp/fv0.9x1.25_141008_polemod_ESMFmesh.nc

 

[jedwards]

So what should have been printed is something like
ERROR: shr_pio_getindex :: compname=ATM not found in CPL, ALL, LND, ATM, etc
Somehow that variable, io_compname, is being overwritten by the mesh file path.

 

[yfang]

perlmutter has a log file showing PET255 ESM0001:src/addon/NUOPC/src/NUOPC_Driver.F90:2838 Library needed by ESMF not present - Phase 'IPDv01p3' Initialize for modelComp 2: ATM did not return ESMF_SUCCESS.

On compy ESMF_SUCCESS is 0. I wonder it's the same issue. I have added the esmf.mk in configure_machines.xml. What else do I need?

<environment_variables>
<env name="ESMFMKFILE">/global/homes/y/yfang/software/esmf-8.4.1/lib/libO/Linux.gfortran.64.mpich.default/esmf.mk</env>
</environment_variables>