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Some questions when I ./case.setup

zzwflood

zzwflood
New Member
I used the clm5.0(release-clm5.0.35-4-g9399250c0),but create another case by ./create_newcase --case case7 --compset X --res f19_g17 --mach ubuntu --run-unsupported
then I get error when I ./case.build first time,

Code:
Finished creating component namelists
Building gptl with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/gptl.bldlog.221119-212835
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.gptl
Building mct with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/mct.bldlog.221119-212835
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.mct
Building pio with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/pio.bldlog.221119-212835
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.pio
ERROR: /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.pio FAILED, cat /home/zzwflood/CAMA/clm5.0/output/case7/bld/pio.bldlog.221119-212835
pio.bldlog.221119-212835 is in the attachment.
Then I typed ./case.build second time,and I got
Code:
zzwflood@zzwflood:~/CAMA/clm5.0/cime/scripts/case7$ ./case.build
Building case in directory /home/zzwflood/CAMA/clm5.0/cime/scripts/case7
sharedlib_only is False
model_only is False
Setting resource.RLIMIT_STACK to -1 from (8388608, -1)
Generating component namelists as part of build
Creating component namelists
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xatm/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xlnd/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xice/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xocn/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xrof/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xglc/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/xcpl_comps/xwav/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/components/stub_comps/sesp/cime_config/buildnml
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/drivers/mct/cime_config/buildnml
File not found: atm2ocn_fmapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_aave.181205.nc", will attempt to download in check_input_data phase
File not found: atm2ocn_smapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_blin.181205.nc", will attempt to download in check_input_data phase
File not found: atm2ocn_vmapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_patc.181205.nc", will attempt to download in check_input_data phase
File not found: ocn2atm_fmapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_fv1.9x2.5_aave.181205.nc", will attempt to download in check_input_data phase
File not found: ocn2atm_smapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_fv1.9x2.5_aave.181205.nc", will attempt to download in check_input_data phase
File not found: atm2ice_fmapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_aave.181205.nc", will attempt to download in check_input_data phase
File not found: atm2ice_smapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_blin.181205.nc", will attempt to download in check_input_data phase
File not found: atm2ice_vmapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gx1v7_patc.181205.nc", will attempt to download in check_input_data phase
File not found: ice2atm_fmapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_fv1.9x2.5_aave.181205.nc", will attempt to download in check_input_data phase
File not found: ice2atm_smapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_fv1.9x2.5_aave.181205.nc", will attempt to download in check_input_data phase
File not found: lnd2rof_fmapname = "lnd/clm2/mappingdata/maps/1.9x2.5/map_1.9x2.5_nomask_to_0.5x0.5_nomask_aave_da_c120522.nc", will attempt to download in check_input_data phase
File not found: rof2lnd_fmapname = "lnd/clm2/mappingdata/maps/1.9x2.5/map_0.5x0.5_nomask_to_1.9x2.5_nomask_aave_da_c120709.nc", will attempt to download in check_input_data phase
File not found: rof2ocn_fmapname = "cpl/gridmaps/r05/map_r05_TO_gx1v7_aave.161012.nc", will attempt to download in check_input_data phase
File not found: glc2ocn_liq_rmapname = "cpl/gridmaps/gland4km/map_gland4km_to_gx1v7_nn_open_ocean_nnsm_e1000r300_marginal_sea_171105.nc", will attempt to download in check_input_data phase
File not found: glc2ocn_ice_rmapname = "cpl/gridmaps/gland4km/map_gland4km_to_gx1v7_nnsm_e1000r300_171105.nc", will attempt to download in check_input_data phase
File not found: rof2ocn_liq_rmapname = "cpl/gridmaps/r05/map_r05_to_gx1v7_nn_open_ocean_nnsm_e1000r300_marginal_sea_170413.nc", will attempt to download in check_input_data phase
File not found: rof2ocn_ice_rmapname = "cpl/gridmaps/r05/map_r05_to_gx1v7_nnsm_e1000r300_170413.nc", will attempt to download in check_input_data phase
File not found: lnd2glc_fmapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gland4km_aave.170429.nc", will attempt to download in check_input_data phase
File not found: lnd2glc_smapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_gland4km_blin.170429.nc", will attempt to download in check_input_data phase
File not found: glc2lnd_fmapname = "cpl/gridmaps/gland4km/map_gland4km_TO_fv1.9x2.5_aave.170429.nc", will attempt to download in check_input_data phase
File not found: glc2lnd_smapname = "cpl/gridmaps/gland4km/map_gland4km_TO_fv1.9x2.5_aave.170429.nc", will attempt to download in check_input_data phase
File not found: atm2wav_smapname = "cpl/gridmaps/fv1.9x2.5/map_fv1.9x2.5_TO_ww3a_bilin_140702.nc", will attempt to download in check_input_data phase
File not found: ocn2wav_smapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_ww3a_splice_170214.nc", will attempt to download in check_input_data phase
File not found: ice2wav_smapname = "cpl/gridmaps/gx1v7/map_gx1v7_TO_ww3a_splice_170214.nc", will attempt to download in check_input_data phase
File not found: wav2ocn_smapname = "cpl/gridmaps/ww3a/map_ww3a_TO_gx1v7_splice_170214.nc", will attempt to download in check_input_data phase
Finished creating component namelists
Building gptl with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/gptl.bldlog.221119-213003
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.gptl
Building mct with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/mct.bldlog.221119-213003
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.mct
Building pio with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/pio.bldlog.221119-213003
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.pio
Component pio build complete with 5 warnings
Building csm_share with output to file /home/zzwflood/CAMA/clm5.0/output/case7/bld/csm_share.bldlog.221119-213003
   Calling /home/zzwflood/CAMA/clm5.0/cime/src/build_scripts/buildlib.csm_share
Component csm_share build complete with 20 warnings
Building atm with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/atm.bldlog.221119-213003
Building lnd with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/lnd.bldlog.221119-213003
Building ice with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/ice.bldlog.221119-213003
Building ocn with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/ocn.bldlog.221119-213003
Building rof with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/rof.bldlog.221119-213003
Building glc with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/glc.bldlog.221119-213003
Building wav with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/wav.bldlog.221119-213003
Building esp with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/esp.bldlog.221119-213003
sesp built in 2.656290 seconds
xrof built in 3.689503 seconds
xglc built in 3.715448 seconds
xwav built in 3.730208 seconds
xice built in 3.747981 seconds
xlnd built in 3.757596 seconds
xatm built in 3.774217 seconds
xocn built in 3.781337 seconds
Building cesm with output to /home/zzwflood/CAMA/clm5.0/output/case7/bld/cesm.bldlog.221119-213003
Time spent not building: 0.576581 sec
Time spent building: 52.084640 sec
MODEL BUILD HAS FINISHED SUCCESSFULLY
when I typed ./create_newcase --case fcama1 --compset I2000Clm50Sp --res f19_g17 --mach ubuntu --compiler intel --run-unsupported
I got error after ./case.setup
Code:
zzwflood@zzwflood:~/CAMA/clm5.0/cime/scripts/fcama1$ ./case.setup
Setting resource.RLIMIT_STACK to -1 from (8388608, -1)
/home/zzwflood/CAMA/clm5.0/cime/scripts/fcama1/env_mach_specific.xml already exists, delete to replace
Creating batch scripts
Writing case.run script from input template /home/zzwflood/CAMA/clm5.0/cime/config/cesm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/zzwflood/CAMA/clm5.0/cime/config/cesm/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
ERROR: Command: '/home/zzwflood/CAMA/clm5.0/components/cism//cime_config/cism.template /home/zzwflood/CAMA/clm5.0/cime/scripts/fcama1' failed with error 'b"cp: cannot stat '/home/zzwflood/CAMA/clm5.0/components/cism//source_cism/utils/build/generate_ncvars.py': No such file or directory\nERROR cism.build_usernl: cp /home/zzwflood/CAMA/clm5.0/components/cism//source_cism/utils/build/generate_ncvars.py  /home/zzwflood/CAMA/clm5.0/cime/scripts/fcama1/Buildconf/cismIOconf/ failed: 256"' from dir '/home/zzwflood/CAMA/clm5.0/cime/scripts/fcama1'
I hope you can give me some good advices.Thank you very much!
 

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