The speed of mode calculation

[yukai]

Mode runs too slowly, taking an hour for a month's worth of results, which is clearly abnormal speed, what is the reason, and there is no problem with the compilation process.I suspect it's not the server, it's the mode set up somewhere.

 

[dbailey]

Good to hear that you have it running. Can you share the settings from your cice.run script? How many processors are you using?

 

[yukai]

Thank you, I used 24 processes, cice.run script file is as follows:

#!/bin/csh -f

#YHBATCH -J case1

#YHBATCH -q batch

#YHBATCH -A yukai

#YHBATCH -N 1

#YHBATCH --ntasks 24

#YHBATCH --ntasks-per-node=24

#YHBATCH --time=120:00:00

#YHBATCH -e slurm%j.err

#YHBATCH -o slurm%j.out



#--------------------------------------------



cd /WORK/sysu_xcheng_1/chenzq/yukai/CICE-CICE6.0.1/case1

source ./cice.settings || exit 2

source ./env.${ICE_MACHCOMP} || exit 2



echo " "

echo "${0}:"



set stamp = `date '+%y%m%d-%H%M%S'`

set ICE_RUNLOG_FILE = "cice.runlog.${stamp}"



#--------------------------------------------



./setup_run_dirs.csh


#--------------------------------------------

cd ${ICE_RUNDIR}



setenv OMP_NUM_THREADS 1



cp -f ${ICE_CASEDIR}/ice_in ${ICE_RUNDIR}

echo " "

echo "CICE rundir is ${ICE_RUNDIR}"

echo "CICE log file is ${ICE_RUNLOG_FILE}"

echo "CICE run started : `date`"



yhrun -n 24 ./cice >&! $ICE_RUNLOG_FILE

echo "CICE run finished: `date`"

echo " "



#--------------------------------------------



if !(-d ${ICE_LOGDIR}) mkdir -p ${ICE_LOGDIR}

cp -p ${ICE_RUNLOG_FILE} ${ICE_LOGDIR}



grep ' CICE COMPLETED SUCCESSFULLY' ${ICE_RUNLOG_FILE}

if ( $status != 0 ) then

echo "CICE run did not complete - see ${ICE_LOGDIR}/${ICE_RUNLOG_FILE}"

echo "`date` ${0}: ${ICE_CASENAME} run did NOT complete ${ICE_RUNLOG_FILE}" >> ${ICE_CASEDIR}/README.case

exit -1

endif

echo "`date` ${0}: ${ICE_CASENAME} run completed ${ICE_RUNLOG_FILE}" >> ${ICE_CASEDIR}/README.case

echo "done ${0}"

 

[yukai]

Thank you, I used 24 processes, cice.run script file is as follows:

#!/bin/csh -f

#YHBATCH -J case1

#YHBATCH -q batch

#YHBATCH -A yukai

#YHBATCH -N 1

#YHBATCH --ntasks 24

#YHBATCH --ntasks-per-node=24

#YHBATCH --time=120:00:00

#YHBATCH -e slurm%j.err

#YHBATCH -o slurm%j.out



#--------------------------------------------



cd /WORK/sysu_xcheng_1/chenzq/yukai/CICE-CICE6.0.1/case1

source ./cice.settings || exit 2

source ./env.${ICE_MACHCOMP} || exit 2



echo " "

echo "${0}:"



set stamp = `date '+%y%m%d-%H%M%S'`

set ICE_RUNLOG_FILE = "cice.runlog.${stamp}"



#--------------------------------------------



./setup_run_dirs.csh


#--------------------------------------------

cd ${ICE_RUNDIR}



setenv OMP_NUM_THREADS 1



cp -f ${ICE_CASEDIR}/ice_in ${ICE_RUNDIR}

echo " "

echo "CICE rundir is ${ICE_RUNDIR}"

echo "CICE log file is ${ICE_RUNLOG_FILE}"

echo "CICE run started : `date`"



yhrun -n 24 ./cice >&! $ICE_RUNLOG_FILE

echo "CICE run finished: `date`"

echo " "



#--------------------------------------------



if !(-d ${ICE_LOGDIR}) mkdir -p ${ICE_LOGDIR}

cp -p ${ICE_RUNLOG_FILE} ${ICE_LOGDIR}



grep ' CICE COMPLETED SUCCESSFULLY' ${ICE_RUNLOG_FILE}

if ( $status != 0 ) then

echo "CICE run did not complete - see ${ICE_LOGDIR}/${ICE_RUNLOG_FILE}"

echo "`date` ${0}: ${ICE_CASENAME} run did NOT complete ${ICE_RUNLOG_FILE}" >> ${ICE_CASEDIR}/README.case

exit -1

endif

echo "`date` ${0}: ${ICE_CASENAME} run completed ${ICE_RUNLOG_FILE}" >> ${ICE_CASEDIR}/README.case

echo "done ${0}"

Good to hear that you have it running. Can you share the settings from your cice.run script? How many processors are you using?