CLM case "BGC_spinup" run error

[demibing]

Hello everyone,

I've been encountering an issue while trying to practise the "BGC_spinup" case on the website https://escomp.github.io/ctsm-docs/versions/release-clm5.0/html/users_guide/running-special-cases/Spinning-up-the-biogeochemistry-BGC-spinup.html
When I submit case "BGC_spinup", the system displays follow messanges:

Setting resource.RLIMIT_STACK to -1 from (8388608, -1)
Creating component namelists
Calling /clm5.0/cime/src/components/data_comps/datm/cime_config/buildnml
Calling /clm5.0/cime_config/buildnml
Calling /clm5.0/cime/src/components/stub_comps/sice/cime_config/buildnml
Calling /clm5.0/cime/src/components/stub_comps/socn/cime_config/buildnml
Calling /clm5.0/components/mosart//cime_config/buildnml
Running /clm5.0/components/cism//cime_config/buildnml
Calling /clm5.0/cime/src/components/stub_comps/swav/cime_config/buildnml
Calling /clm5.0/cime/src/components/stub_comps/sesp/cime_config/buildnml
Calling /clm5.0/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
Checking that inputdata is available as part of case submission
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Loading input file list: 'Buildconf/cism.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/datm.input_data_list'
Loading input file list: 'Buildconf/mosart.input_data_list'
Loading input file list: 'Buildconf/clm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Submitting job script sbatch --time 96:00:00 -p compute .case.run --resubmit
Submitted job id is 407
Submit job case.st_archive
Submitting job script sbatch --time 0:20:00 -p compute --dependency=afterok:407 case.st_archive --resubmit
Submitted job id is 408
Submitted job case.run with id 407
Submitted job case.st_archive with id 408

Unfortunately, I couldn't identify the specific problem based on the prompt provided by the system. So I check the casestatus, and the system show follow messages:

2023-06-14 16:33:58: xmlchange success <command> ./xmlchange CLM_ACCELERATED_SPINUP=on </command>
---------------------------------------------------
2023-06-14 16:34:14: case.setup starting
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2023-06-14 16:34:15: case.setup success
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2023-06-14 16:34:31: case.build starting
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2023-06-14 16:38:27: case.build success
---------------------------------------------------
2023-06-14 16:41:06: xmlchange success <command> ./xmlchange RESUBMIT=3,STOP_N=50,STOP_OPTION=nyears,STOP_DATE=02010101 </command>
---------------------------------------------------
2023-06-14 16:41:40: case.submit starting
---------------------------------------------------
2023-06-14 16:41:45: case.submit success case.run:405, case.st_archive:406
---------------------------------------------------
2023-06-14 16:41:46: case.run starting
---------------------------------------------------
2023-06-14 16:41:51: model execution starting
---------------------------------------------------
2023-06-14 16:41:52: model execution success
---------------------------------------------------
2023-06-14 16:41:52: case.run error
ERROR: RUN FAIL: Command 'mpirun -n 80 clm5.0/cime/scripts/BGC_spinup/BGC_spinup/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed
See log file for details: clm5.0/cime/scripts/BGC_spinup/BGC_spinup/run/cesm.log.405.230614-164146

Has anyone else experienced a similar issue or can offer guidance on how to resolve this error? Any assistance or suggestions would be greatly appreciated.

Thank you in advance for your help!"

 

[oleson]

You will need to look at the log files to determine the error, e.g., clm5.0/cime/scripts/BGC_spinup/BGC_spinup/run/cesm.log.405.230614-164146

 

[demibing]

"Thank you for getting back to me. I've checked the log files and I'm wondering if the error message 'timeaddmonths(): MM out of range' indicates the source of the problem. Could you please advise on how to fix this issue?

 

[oleson]

I don't recognize that error message so I grepped for "timeaddmonths" in release-cesm2.1.3 and got:

cime/src/share/esmf_wrf_timemgr/ESMF_TimeMod.F90: CALL timeaddmonths( time, MM, ierr )
cime/src/share/esmf_wrf_timemgr/ESMF_TimeMod.F90: ! PRINT *,'DEBUG: ESMF_TimeSet(): back from timeaddmonths'
cime/src/share/esmf_wrf_timemgr/ESMF_TimeMod.F90: SUBROUTINE timeaddmonths( time, MM, ierr )
cime/src/share/esmf_wrf_timemgr/ESMF_TimeMod.F90: CALL wrf_message( 'ERROR timeaddmonths(): MM out of range' )
cime/src/share/esmf_wrf_timemgr/ESMF_TimeMod.F90: END SUBROUTINE timeaddmonths

Which doesn't make any sense to me since you are running a CLM5 spinup, not sure why the esmf_wrf time manager is being called.
Not sure what to suggest other than we might be able to help further if you provide the information requested here:

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