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Could NOT find PnetCDF_Fortran NetCDF_C NetCDF_Fortran (Porting to CCAD's Serafin

marcost2

Marcos Tolcachir
New Member
Hi CESM-understanding people, i'm currently working on porting CESM2 to CCAD's Serafin (60 nodes, 2xEpyc7532, 128gb RAM and SLURM batch system)
I've slowly been making the proper files (config_batch, machines and compilers) which can be found at
github.com/marcost2/CESM2_CONFIG
And using the regression_tests to slowly work out the issues
However, now im stuck with a new issue that i just don't understand what's causing it; while running "/home/mtolcachir/my_cesm_sandbox/cime/scripts/create_test --walltime=0:15:00 cime_developer -t fake_testing_only_20220421_102547 --baseline-root /tmp/mtolcachir/scripts_regression_test.20220421_101705/baselines --test-root=/tmp/mtolcachir/scripts_regression_test.20220421_101705 --output-root=/tmp/mtolcachir/scripts_regression_test.20220421_101705" all of the builds for the tests fail with the same error, "Could NOT find PnetCDF_Fortran (missing: PnetCDF_Fortran_LIBRARY PnetCDF_Fortran_INCLUDE_DIR)" preceded by "Could NOT find NetCDF_C (missing: NetCDF_C_LIBRARY NetCDF_C_INCLUDE_DIR) Could NOT find NetCDF_Fortran (missing: NetCDF_Fortran_LIBRARY NetCDF_Fortran_INCLUDE_DIR)", now i've messed with the enviroment variables, slib flags and whatnot but i just cant seem to find the issue
I am attaching the output of describe_version and the bldlog for the last of the tests (all of them have exactly the same issue)

Any pointing in the right direction will be much appreciated
 

Attachments

  • version_info.txt
    5.4 KB · Views: 3
  • pio.bldlog.220421-123928.txt
    16.5 KB · Views: 3

marcost2

Marcos Tolcachir
New Member
This was fixed by forgoing modules and installing the libraries directly. Now tracking down other issues
 

zhangguanhao

zhangguanhao
New Member
Hello,I met a similar question,"Could NOT find PnetCDF_Fortran (missing: PnetCDF_Fortran_LIBRARY PnetCDF_Fortran_INCLUDE_DIR)"
Could you please give some suggestions?
Thank you so much!
 

zhangguanhao

zhangguanhao
New Member
Sir, this question was caused by setting "--disable-fortran" when we installed "Pnetcdf". When we installed the "Pnetcdf" again problems got solved, and thank you so much, hope you can have a good day!
Best wishes!
 
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