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pio error (cesm1_2_2)

J

jedwards

CSEG and Liaisons
Staff member
This is not the version of pio downloaded from https://svn-ccsm-models.cgd.ucar.edu/cesm1/release_tags/cesm1_2_2
it's a newer version which is not compatible with cesm1_2_2.
 
J

jedwards

CSEG and Liaisons
Staff member
PIO comes with the cesm1_2_2 distribution, cesm originates in several different source repositories and sometimes one or more of them fail, I think that in your case the pio download failed when you first got cesm and you missed the error message that was output.
 
C

conte@iap-kborn_de

New Member
Thank you very much for your last comment. It was really helpful.I managed to download the correct pio version, and tried everything again.However I have encountered another problem... Pio is succesfully compiled, but not installed in the right place. And I don't know why.I could try to hack it, but I think it is better that pio files are installed by the scripts.I am attaching the pio and csm_share build logs. In the first one you will see (at the end) the cp files have no match.I would appreciate any advice.And thanks again!
 
J

jedwards

CSEG and Liaisons
Staff member
It looks like you tried to build again over an old build directory.   Completly remove the build directory and try again.
 
C

conte@iap-kborn_de

New Member
Hi,I finally made it run. I was able to "execute" the file "case.run".When it finished, I got the following message: CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------Fri May  6 15:22:27 CEST 2016 -- CSM EXECUTION BEGINS HEREFri May  6 15:35:26 CEST 2016 -- CSM EXECUTION HAS FINISHED(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============Archiving cesm output to /home/*****/export/scratch/archive/waccm_2Calling the short-term archiving script st_archive.shst_archive.sh: start of short-term archivingst_archive.sh: restart files from end of run will be saved,                    interim restart files will be deletedst_archive.sh: short-term archiving completed successfully/homenas/home/*****/export/waccm/builtrun/waccm_2/Tools/ccsm_getenv: No such file or directory.gzip: timing/ccsm_timing_stats.160506-152159: No such file or directory Could you please give me any advice on the two errors at the end of the message? I mean the lack of the files...(Apologies for this question but, as I said before, I am new at this)Thank you!!  
 
J

jedwards

CSEG and Liaisons
Staff member
What is the value of the environment variable $USER?    It looks like that variable either isn't set or is set to something incorrect. 
 
C

conte@iap-kborn_de

New Member
Hi!There is no problem. I just changed changed the user variable to "*****" for the post.Here I transcribe the complete message: ------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /home/ma017/export/waccm/builtrun/waccm_2 infile is /home/ma017/export/waccm/case/waccm_2/Buildconf/cplconf/cesm_namelist  CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /home/ma017/export/scratch/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------Mon May  9 10:02:27 CEST 2016 -- CSM EXECUTION BEGINS HEREMon May  9 10:15:38 CEST 2016 -- CSM EXECUTION HAS FINISHED(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============Archiving cesm output to /home/ma017/export/scratch/archive/waccm_2Calling the short-term archiving script st_archive.sh st_archive.sh: start of short-term archivingst_archive.sh: restart files from end of run will be saved,                interim restart files will be deletedst_archive.sh: short-term archiving completed successfully/homenas/home/ma017/export/waccm/builtrun/waccm_2/Tools/ccsm_getenv: No such file or directory.gzip: timing/ccsm_timing_stats.160509-100200: No such file or directory

Thanks! 
 
J

jedwards

CSEG and Liaisons
Staff member
No such file or directory:
/homenas/home/ma017/export/waccm/builtrun/waccm_2/Tools/ccsm_getenv
 
J

jadhavom91@gmail_com

New Member
I am getting error while building CESM1_2_2_CAMChem. On one forum it has mentioned that 'to set proper path to netcdf.inc' (which I have already set !). It works properly with shared libraries but throughs following error while building statistically. Please suggest solution as I am really stuck to this point.  PGF90-W-0435-Array declared with zero size (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/nf_mod.F90: 1617)
PGF90-S-0079-Keyword form of argument illegal in this context for comm (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/ionf_mod.F90: 82)
PGF90-S-0079-Keyword form of argument illegal in this context for info (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/ionf_mod.F90: 101)
  0 inform,   0 warnings,   2 severes, 0 fatal for create_nf
PGF90-S-0187-Too many arguments specified for nf90_open (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/ionf_mod.F90: 204)
PGF90-S-0079-Keyword form of argument illegal in this context for info (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/ionf_mod.F90: 208)
  0 inform,   0 warnings,   2 severes, 0 fatal for open_nf
PGF90-S-0038-Symbol, nf90_def_var_fill, has not been explicitly declared (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/nf_mod.F90)
PGF90-S-0038-Symbol, nf90_def_var_deflate, has not been explicitly declared (/home/cc/vfaculty/omjadhav.vfaculty/cesm1_2_2_CAMChem2/models/utils/pio/nf_mod.F90)
  0 inform,   0 warnings,   2 severes, 0 fatal for def_var_md
gmake[2]: *** [CMakeFiles/pio.dir/nf_mod.F90.o] Error 2
gmake[2]: *** Waiting for unfinished jobs....
gmake[2]: *** [CMakeFiles/pio.dir/ionf_mod.F90.o] Error 2
 
J

jedwards

CSEG and Liaisons
Staff member
I think that you may be building with a netcdf library that is not compatible with the pio library you are using.   From the line aboveNETCDF_DIR:STRING=USERDEFINED_MUST_EDIT_THIS  suggests that you haven't defined the path to netcdf properly, this is probably the root of the problem. 
 
P

popatsalunke9@gmail_com

New Member
Hi,
When I run the build command, I receive an error.

-------------------------------------------------------------------------
CESM BUILDEXE SCRIPT STARTING
rm: No match.
COMPILER is intel
- Build Libraries: mct gptl pio csm_share
Wed May 17 11:03:39 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.230517-110333
Wed May 17 11:04:51 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/gptl.bldlog.230517-110333
Wed May 17 11:04:55 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
ERROR: buildlib.pio failed, see /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
ERROR: cat /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333

-------------------------------------------------------------------------
Wed May 17 11:04:55 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
set pio_dir=/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
cd /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90
gmake /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile MODEL=pio USER_CMAKE_OPTS= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90 PIO_LIBDIR=/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio -f /home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/Makefile
cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/mkSrcfiles
cp -f /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Filepath /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Deppath
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/mkDepends Deppath Srcfiles > /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Depends
cd /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio; \
CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -xHost -O2 -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_C_FLAGS:STRING="-O2 -fp-model precise -xHost -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_CXX_FLAGS:STRING="-O2 -fp-model precise -xHost -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D NETCDF_DIR:STRING=/home/software/netcdf/4.4.1_nfsv3 -D USER_CMAKE_MODULE_DIR:STRING=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D WITH_PNETCDF:LOGICAL=FALSE -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90 /net/fs10/d2/psalunke/CESM1.2.2/models/utils/pio
-- The C compiler identification is Intel 17.0.3.20170404
-- The Fortran compiler identification is Intel 17.0.3.20170404
-- Check for working C compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpicc
-- Check for working C compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90
-- Check for working Fortran compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 supports Fortran 90
-- Checking whether /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 supports Fortran 90 -- yes
WARNING: did not find netcdf fortran library
NETCDF built without MPIIO
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.16") found components: C HL
-- Adding hdf5 libraries
-- Could NOT find NETCDF (missing: NETCDF_Fortran_LIBRARY)
CMake Warning at CMakeLists.txt:63 (MESSAGE):
Warning: Not building with PNetcdf - cannot run all regression tests.
-- MPIIO detected and enabled.
-- MPI Fortran module detected and enabled.
-- Configuring done
CMake Error at CMakeLists.txt:190 (ADD_LIBRARY):
Target "pio" links to item " -L/home/software/netcdf/4.4.1_nfsv3/lib
-lnetcdf" which has leading or trailing whitespace. This is now an error
according to policy CMP0004.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:

CMAKE_CXX_FLAGS
USER_CMAKE_MODULE_DIR

-- Build files have been written to: /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/Makefile:498: recipe for target '/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile' failed
gmake: *** [/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile] Error 1
exit 1
 
M

Ming-Qiang Liang

Ming-Qiang Liang
New Member
popatsalunke9@gmail_com said:
Hi,
When I run the build command, I receive an error.

-------------------------------------------------------------------------
CESM BUILDEXE SCRIPT STARTING
rm: No match.
COMPILER is intel
- Build Libraries: mct gptl pio csm_share
Wed May 17 11:03:39 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/mct.bldlog.230517-110333
Wed May 17 11:04:51 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/gptl.bldlog.230517-110333
Wed May 17 11:04:55 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
ERROR: buildlib.pio failed, see /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
ERROR: cat /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333

-------------------------------------------------------------------------
Wed May 17 11:04:55 EDT 2023 /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio.bldlog.230517-110333
set pio_dir=/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
cd /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90
gmake /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile MODEL=pio USER_CMAKE_OPTS= -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90 PIO_LIBDIR=/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio -f /home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/Makefile
cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/mkSrcfiles
cp -f /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Filepath /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Deppath
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/mkDepends Deppath Srcfiles > /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Depends
cd /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio; \
CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -xHost -O2 -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_C_FLAGS:STRING="-O2 -fp-model precise -xHost -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_CXX_FLAGS:STRING="-O2 -fp-model precise -xHost -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I. -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/software/netcdf/4.4.1_nfsv3/include -I/home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/include/../include -I/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/include -I/net/fs10/d2/psalunke/CESM1.2.2/models/csm_share/shr" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D NETCDF_DIR:STRING=/home/software/netcdf/4.4.1_nfsv3 -D USER_CMAKE_MODULE_DIR:STRING=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D WITH_PNETCDF:LOGICAL=FALSE -D USER_CMAKE_MODULE_PATH=/net/fs10/d2/psalunke/CESM1.2.2/scripts/ccsm_utils/CMake -D GENF90_PATH=/net/fs10/d2/psalunke/CESM1.2.2/tools/cprnc/genf90 /net/fs10/d2/psalunke/CESM1.2.2/models/utils/pio
-- The C compiler identification is Intel 17.0.3.20170404
-- The Fortran compiler identification is Intel 17.0.3.20170404
-- Check for working C compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpicc
-- Check for working C compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90
-- Check for working Fortran compiler: /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 supports Fortran 90
-- Checking whether /home/software/intel/intel-2017.0.1/pkg/openmpi/2.0.2/bin/mpif90 supports Fortran 90 -- yes
WARNING: did not find netcdf fortran library
NETCDF built without MPIIO
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.16") found components: C HL
-- Adding hdf5 libraries
-- Could NOT find NETCDF (missing: NETCDF_Fortran_LIBRARY)
CMake Warning at CMakeLists.txt:63 (MESSAGE):
Warning: Not building with PNetcdf - cannot run all regression tests.
-- MPIIO detected and enabled.
-- MPI Fortran module detected and enabled.
-- Configuring done
CMake Error at CMakeLists.txt:190 (ADD_LIBRARY):
Target "pio" links to item " -L/home/software/netcdf/4.4.1_nfsv3/lib
-lnetcdf" which has leading or trailing whitespace. This is now an error
according to policy CMP0004.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:

CMAKE_CXX_FLAGS
USER_CMAKE_MODULE_DIR

-- Build files have been written to: /net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio
/home/psalunke/fs10/psalunke/CESM1.2.2/cases/CAM9/Tools/Makefile:498: recipe for target '/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile' failed
gmake: *** [/net/fs10/d2/psalunke/CESM1.2.2/cases/CAM9/bld/intel/openmpi/nodebug/nothreads/pio/Makefile] Error 1
exit 1
Click to expand...
hi, popatsalunke9, do u have save this problem? I have met same problem with you when I want to use gnu, Do you have any sueggestion？ or comments?
 
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