Porting cesm1.2.0, 'underscore' problems

A

advita6@gmail_com

New Member
Hi Santo,./check_case
check_case OK
[asampath@npp port1]$ csh port1.run
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /home/asampath/CESM/cesm1_2_2/scripts/port1/run
 infile is /home/asampath/CESM/cesm1_2_2/scripts/port1/Buildconf/cplconf/cesm_namelist
CAM writing dry deposition namelist to drv_flds_in
CAM writing namelist to atm_in
CLM configure done.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
CICE configure done.
POP2 build-namelist: ocn_grid is gx1v6
POP2 build-namelist: ocn_tracer_modules are  iage
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/asampath/CESM/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION BEGINS HERE
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150812-223329: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150812-223329


What might be causing this?Thank youThank you. It works. now issues in run.   
 
A

advita6@gmail_com

New Member
Hi Santo,./check_case
check_case OK
[asampath@npp port1]$ csh port1.run
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /home/asampath/CESM/cesm1_2_2/scripts/port1/run
 infile is /home/asampath/CESM/cesm1_2_2/scripts/port1/Buildconf/cplconf/cesm_namelist
CAM writing dry deposition namelist to drv_flds_in
CAM writing namelist to atm_in
CLM configure done.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
CICE configure done.
POP2 build-namelist: ocn_grid is gx1v6
POP2 build-namelist: ocn_tracer_modules are  iage
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/asampath/CESM/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION BEGINS HERE
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150812-223329: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150812-223329


What might be causing this?Thank youThank you. It works. now issues in run.   
 
A

advita6@gmail_com

New Member
Hi Santo,./check_case
check_case OK
[asampath@npp port1]$ csh port1.run
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /home/asampath/CESM/cesm1_2_2/scripts/port1/run
 infile is /home/asampath/CESM/cesm1_2_2/scripts/port1/Buildconf/cplconf/cesm_namelist
CAM writing dry deposition namelist to drv_flds_in
CAM writing namelist to atm_in
CLM configure done.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
CICE configure done.
POP2 build-namelist: ocn_grid is gx1v6
POP2 build-namelist: ocn_tracer_modules are  iage
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/asampath/CESM/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION BEGINS HERE
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150812-223329: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150812-223329


What might be causing this?Thank youThank you. It works. now issues in run.   
 
A

advita6@gmail_com

New Member
Hi Santo,./check_case
check_case OK
[asampath@npp port1]$ csh port1.run
-------------------------------------------------------------------------
 CESM BUILDNML SCRIPT STARTING
 - To prestage restarts, untar a restart.tar file into /home/asampath/CESM/cesm1_2_2/scripts/port1/run
 infile is /home/asampath/CESM/cesm1_2_2/scripts/port1/Buildconf/cplconf/cesm_namelist
CAM writing dry deposition namelist to drv_flds_in
CAM writing namelist to atm_in
CLM configure done.
CLM adding use_case 2000_control defaults for var sim_year with val 2000
CLM adding use_case 2000_control defaults for var sim_year_range with val constant
CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use
CICE configure done.
POP2 build-namelist: ocn_grid is gx1v6
POP2 build-namelist: ocn_tracer_modules are  iage
 CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
 CESM PRESTAGE SCRIPT STARTING
 - Case input data directory, DIN_LOC_ROOT, is /home/asampath/CESM/inputdata
 - Checking the existence of input datasets in DIN_LOC_ROOT
 CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION BEGINS HERE
Wed Aug 12 22:34:01 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150812-223329: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150812-223329


What might be causing this?Thank youThank you. It works. now issues in run.   
 
S

santos

Member
The "runjob" command is specific to systems with Cobalt. I don't know what system you are running with, but if you are getting this error with a non-cobalt system, you are using the wrong mkbatch script, and you should start with a different one.
 
S

santos

Member
The "runjob" command is specific to systems with Cobalt. I don't know what system you are running with, but if you are getting this error with a non-cobalt system, you are using the wrong mkbatch script, and you should start with a different one.
 
S

santos

Member
The "runjob" command is specific to systems with Cobalt. I don't know what system you are running with, but if you are getting this error with a non-cobalt system, you are using the wrong mkbatch script, and you should start with a different one.
 
S

santos

Member
The "runjob" command is specific to systems with Cobalt. I don't know what system you are running with, but if you are getting this error with a non-cobalt system, you are using the wrong mkbatch script, and you should start with a different one.
 
A

advita6@gmail_com

New Member
Hi,This the error i get. I have attached here the log file.Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150813-144742Could you please help me to fix this bug?Thank you
 
A

advita6@gmail_com

New Member
Hi,This the error i get. I have attached here the log file.Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150813-144742Could you please help me to fix this bug?Thank you
 
A

advita6@gmail_com

New Member
Hi,This the error i get. I have attached here the log file.Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150813-144742Could you please help me to fix this bug?Thank you
 
A

advita6@gmail_com

New Member
Hi,This the error i get. I have attached here the log file.Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150813-144742Could you please help me to fix this bug?Thank you
 
A

advita6@gmail_com

New Member
Hi,I created the case with new resolution. Now  i get the different error. Could you please help me to fix that. I don't have to use batch submission. I use direct execution of xx.run.Here attached the copy of xxxx.run. I am not what to use mpiexec or mpirun. Both are there. And then How many processors per node i should set. ? Sun Aug 16 19:37:24 CDT 2015 -- CSM EXECUTION BEGINS HERE
Sun Aug 16 19:37:27 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150816-193653: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653
[asampath@npp port1]$ vi /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653

I also posted in pop2 forum. I didn't receive reply. Could you please help me to fix this bug? I'm stuck . Thank you.
 
A

advita6@gmail_com

New Member
Hi,I created the case with new resolution. Now  i get the different error. Could you please help me to fix that. I don't have to use batch submission. I use direct execution of xx.run.Here attached the copy of xxxx.run. I am not what to use mpiexec or mpirun. Both are there. And then How many processors per node i should set. ? Sun Aug 16 19:37:24 CDT 2015 -- CSM EXECUTION BEGINS HERE
Sun Aug 16 19:37:27 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150816-193653: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653
[asampath@npp port1]$ vi /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653

I also posted in pop2 forum. I didn't receive reply. Could you please help me to fix this bug? I'm stuck . Thank you.
 
A

advita6@gmail_com

New Member
Hi,I created the case with new resolution. Now  i get the different error. Could you please help me to fix that. I don't have to use batch submission. I use direct execution of xx.run.Here attached the copy of xxxx.run. I am not what to use mpiexec or mpirun. Both are there. And then How many processors per node i should set. ? Sun Aug 16 19:37:24 CDT 2015 -- CSM EXECUTION BEGINS HERE
Sun Aug 16 19:37:27 CDT 2015 -- CSM EXECUTION HAS FINISHED
grep: cpl.log.150816-193653: No such file or directory
Model did not complete - see /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653
[asampath@npp port1]$ vi /home/asampath/CESM/cesm1_2_2/scripts/port1/run/cesm.log.150816-193653

I also posted in pop2 forum. I didn't receive reply. Could you please help me to fix this bug? I'm stuck . Thank you.
 
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