Running CESM on NCAR's Yellowstone

[yafangzhong@wisc_edu]

Hi Jim,

The CCSM3 has problems with resubmitting jobs automatically, though the manually submitted continue-run would be fine.
Could you please take a look at /glade/u/home/yafang/test1? There are two stdout files from Mar 1st. ccsm.stdout.891572
was from a manually submitted continue-run, ccsm.stdout.891581 was from the one submitted automatically. env_run was emptied
as a result of the aborted run.

Thanks,

Yafang

 

[gchen9@gmail_com]

Yafang, please change as the following in your run script and give a try:

Replace
sed '1,/^ *setenv *CONTINUE_RUN .*/s//setenv CONTINUE_RUN TRUE/'
with
sed '1,/^ *setenv *CONTINUE_RUN .*/ s/setenv *CONTINUE_RUN .*/setenv CONTINUE_RUN TRUE/;'

Guangshan

 

[gchen9@gmail_com]

Yafang, please change as the following in your run script and give a try:

Replace
sed '1,/^ *setenv *CONTINUE_RUN .*/s//setenv CONTINUE_RUN TRUE/'
with
sed '1,/^ *setenv *CONTINUE_RUN .*/ s/setenv *CONTINUE_RUN .*/setenv CONTINUE_RUN TRUE/;'

Guangshan

 

[gchen9@gmail_com]

Yafang, please change as the following in your run script and give a try:

Replace
sed '1,/^ *setenv *CONTINUE_RUN .*/s//setenv CONTINUE_RUN TRUE/'
with
sed '1,/^ *setenv *CONTINUE_RUN .*/ s/setenv *CONTINUE_RUN .*/setenv CONTINUE_RUN TRUE/;'

Guangshan

 

[gchen9@gmail_com]

Yafang, please change as the following in your run script and give a try:

Replace
sed '1,/^ *setenv *CONTINUE_RUN .*/s//setenv CONTINUE_RUN TRUE/'
with
sed '1,/^ *setenv *CONTINUE_RUN .*/ s/setenv *CONTINUE_RUN .*/setenv CONTINUE_RUN TRUE/;'

Guangshan

 

[gchen9@gmail_com]

Yafang, please change as the following in your run script and give a try:

Replace
sed '1,/^ *setenv *CONTINUE_RUN .*/s//setenv CONTINUE_RUN TRUE/'
with
sed '1,/^ *setenv *CONTINUE_RUN .*/ s/setenv *CONTINUE_RUN .*/setenv CONTINUE_RUN TRUE/;'

Guangshan

 

[yafangzhong@wisc_edu]

That works. Thanks for your help, Guangshan.

 

[yafangzhong@wisc_edu]

That works. Thanks for your help, Guangshan.

 

[yafangzhong@wisc_edu]

That works. Thanks for your help, Guangshan.

 

[yafangzhong@wisc_edu]

That works. Thanks for your help, Guangshan.

 

[yafangzhong@wisc_edu]

That works. Thanks for your help, Guangshan.

 

[shanshans@uchicago_edu]

I am trying to run run-scam.csh in the directory /cesm1_1_1/models/atm/cam/bld, after "module swap intel pgi" and specifying netcdf directory /glade/apps/opt/netcdf/4.2/pgi/12.5/, the error message is " Looking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using pgf95Test linking to NetCDF library... okCAM configure done.building CAM in /glade/p/work/*/scam_run/scamrun/bld ...CAM build failed: see /glade/p/work/*/scam_run/scamrun/bld/MAKE.out" The MAKE.out file is attached here. Thank you! 

 

[shanshans@uchicago_edu]

I am trying to run run-scam.csh in the directory /cesm1_1_1/models/atm/cam/bld, after "module swap intel pgi" and specifying netcdf directory /glade/apps/opt/netcdf/4.2/pgi/12.5/, the error message is " Looking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using pgf95Test linking to NetCDF library... okCAM configure done.building CAM in /glade/p/work/*/scam_run/scamrun/bld ...CAM build failed: see /glade/p/work/*/scam_run/scamrun/bld/MAKE.out" The MAKE.out file is attached here. Thank you! 

 

[shanshans@uchicago_edu]

I am trying to run run-scam.csh in the directory /cesm1_1_1/models/atm/cam/bld, after "module swap intel pgi" and specifying netcdf directory /glade/apps/opt/netcdf/4.2/pgi/12.5/, the error message is " Looking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using pgf95Test linking to NetCDF library... okCAM configure done.building CAM in /glade/p/work/*/scam_run/scamrun/bld ...CAM build failed: see /glade/p/work/*/scam_run/scamrun/bld/MAKE.out" The MAKE.out file is attached here. Thank you! 

 

[shanshans@uchicago_edu]

I am trying to run run-scam.csh in the directory /cesm1_1_1/models/atm/cam/bld, after "module swap intel pgi" and specifying netcdf directory /glade/apps/opt/netcdf/4.2/pgi/12.5/, the error message is " Looking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using pgf95Test linking to NetCDF library... okCAM configure done.building CAM in /glade/p/work/*/scam_run/scamrun/bld ...CAM build failed: see /glade/p/work/*/scam_run/scamrun/bld/MAKE.out" The MAKE.out file is attached here. Thank you! 

 

[shanshans@uchicago_edu]

I am trying to run run-scam.csh in the directory /cesm1_1_1/models/atm/cam/bld, after "module swap intel pgi" and specifying netcdf directory /glade/apps/opt/netcdf/4.2/pgi/12.5/, the error message is " Looking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using pgf95Test linking to NetCDF library... okCAM configure done.building CAM in /glade/p/work/*/scam_run/scamrun/bld ...CAM build failed: see /glade/p/work/*/scam_run/scamrun/bld/MAKE.out" The MAKE.out file is attached here. Thank you!