Error by running CLM5.0

[jgx]

Hi,
While running the clm5.0.03. The model setup and built has been successful. When I submit the case, it shows the
'run command is mpirun -np 4 /home/clm/cesm/scratch/xinjiang_1/bld/cesm.exe >> cesm.log.$LID 2>&1
ERROR: RUN FAIL: Command 'mpirun -np 4 /home/clm/cesm/scratch/xinjiang_1/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed
See log file for details: /home/clm/cesm/scratch/xinjiang_1/run/cesm.log.230523-091433
'.
I am trying to run the I2000CLM50FatesGs compset with f09_g17 resolution. I have compiled the Netcdf with intel compiler.
I have attached the log file, env_run.xml, env_mach_pes.xml for the case.

 

[oleson]

I don't see any attachments.

 

[erik]

Is the issue porting CLM to another machine that isn't in the list of supported machines? If so there are suggestions of how to get it working in instructions on porting cime to other machines. It can be a difficult task to get the model to work on another machine. If you can get access to a supported machine that can be helpful just so you can be successful and then have experience to move to your own machine.

 

[jgx]

Sorry, I have uploaded the attachements

 

[oleson]

It looks like you might have subset the f09_g17 surface dataset and domain file? The error might have something to do with the fact that you have the runoff model active, which is still global while your surface dataset is regional. I see the following in your cesm log:

MCT::m_SparseMatrixPlus:: FATAL--length of vector y different from row count of sMat.Length of y = 323 Number of rows in sMat = 55296

323 is your regional domain (19x17) while 55296 is the f09 global domain (192x288).
Trying running without the runoff model active by using SROF (stub runoff model) instead of MOSART in your compset when creating your case.

 

[jgx]

It looks like you might have subset the f09_g17 surface dataset and domain file? The error might have something to do with the fact that you have the runoff model active, which is still global while your surface dataset is regional. I see the following in your cesm log:

MCT::m_SparseMatrixPlus:: FATAL--length of vector y different from row count of sMat.Length of y = 323 Number of rows in sMat = 55296

323 is your regional domain (19x17) while 55296 is the f09 global domain (192x288).
Trying running without the runoff model active by using SROF (stub runoff model) instead of MOSART in your compset when creating your case.

Okay, thank you for your answer, it is very helpful to me

 

[ah828]

I am running a regional 60-member ensemble spin up case in CTSM using CAM6 atmospheric forcing and experienced the error:

MPT: --------stack traceback-------
***.MCT(MPEU)::die.: from MCT::m_SparseMatrixPlus::initDistributed_()
MCT::m_SparseMatrixPlus:: FATAL--length of vector y different from row count of sMat.Length of y = 950 Number of rows in sMat = 55296

After updating my setup to use the SROF (stub runoff model) instead of MOSART in my compset (per @oleson above), my run completed without any errors.

 

[ah828]

It looks like you might have subset the f09_g17 surface dataset and domain file? The error might have something to do with the fact that you have the runoff model active, which is still global while your surface dataset is regional. I see the following in your cesm log:

MCT::m_SparseMatrixPlus:: FATAL--length of vector y different from row count of sMat.Length of y = 323 Number of rows in sMat = 55296

323 is your regional domain (19x17) while 55296 is the f09 global domain (192x288).
Trying running without the runoff model active by using SROF (stub runoff model) instead of MOSART in your compset when creating your case.

@oleson So I am using the default global initial conditions for 2000 in my ensemble spin-up and would like to include MOSART in my run, do you think I might be able to accomplish this by subsetting the default input to frivinp_rtm (full pathname of input datafile for RTM)?

 

[oleson]

Other posts indicate that it would be a lot of work to run MOSART regionally, so I don't think so. E.g.,

ERROR: ROF_GRID is null MOSART_MODE not NULL

Dear scientists of NCAR I cut a regional surfcase dataset and domain dataset from the default 0.125x0.125 spatial resolution surfdata and domain dataset without changing the resolution by using the CLM5 tools. Using the regional surfdata and domain data, I tried to create a case to simulate...

bb.cgd.ucar.edu

I personally don't know what would be involved, but if anyone else on this Forum has done this successfully, please chime in.