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./mkmapdata.sh

P

pengxq13@lzu_edu_cn

New Member
Dear all, I prepared to creat the single-point surface data, when I come to this step,there are several errors:[PengXiaoqing@localhost mkmapdata]$ export ESMFBIN_PATH=/home/public/software/esmf-6.3.0/bin/binO/Linux.intel.64.mpiuni.default[PengXiaoqing@localhost mkmapdata]$ export MY_ESMF_REGRID=/home/public/software/esmf-6.3.0/bin/binO/Linux.intel.64.mpiuni.default/ESMF_RegridWeightGen[PengXiaoqing@localhost mkmapdata]$ ./mkmapdata.sh -r 1x1_arou -f /home/PengXiaoqing/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_arou_nomask_c150105.nc -t regional./mkmapdata.shScript to create mapping files required by mksurfdata_mapquery command is ./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5  -justvalue -options sim_year=2000 -csmdata /home/PengXiaoqing/model/cesm1_2_1/inputdata Using user specified scrip grid file: /home/PengXiaoqing/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_arou_nomask_c150105.ncOutput grid resolution is 1x1_arouMachine localhost.localdomain NOT recognizedCreating mapping file: map_0.5x0.5_AVHRR_to_1x1_arou_nomask_aave_da_c150106.ncFrom input grid: /home/PengXiaoqing/model/cesm1_2_1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.ncFor output grid: /home/PengXiaoqing/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_arou_nomask_c150105.nc   ERROR: Unable to get dimension information from: /home/PengXiaoqing/model/cesm1_2_1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgr id_0.5x0.5_AVHRR_c110228.nc                                                                                                                                       ERROR: Problem on processor            0  . Please see the PET*.RegridWeightGen.Log files for a traceback.Error status returned from mkmapdata script[PengXiaoqing@localhost mkmapdata]$ vi PET0.RegridWeightGen.Log  20150106 113708.650 INFO             PET0 Running with ESMF Version 6.3.0rp120150106 113708.650 ERROR            PET0 ESMF_IOScrip.F90:204 ESMF_ScripInq Library needed by ESMF not present - - ESMF_NETCDF not defined when lib was compiled20150106 113708.650 ERROR            PET0 ESMF_RegridWeightGen.F90:585 ESMF_RegridWeightGenFile Library needed by ESMF not present - Internal subroutine call returned Error  But I have install the ESMF6.3.0，and installed sucessful.
 
J

jedwards

CSEG and Liaisons
Staff member
You need to build ESMF with netcdf IO configured:    ESMF_NETCDF not defined when lib was compiled 
 
P

pengxq13@lzu_edu_cn

New Member
When I install the ESMF, I have defined the ESMF_NETCDF [root@localhost esmf]#  export ESMF_OS=Linux[root@localhost esmf]# export ESMF_DIR=/home/public/source/esmf[root@localhost esmf]# export ESMF_TESTWITHREADS=OFF[root@localhost esmf]# export ESMF_COMM=mpiuni[root@localhost esmf]# export ESMF_COMPILER=intel[root@localhost esmf]# export ESMF_ABI=64[root@localhost esmf]# export ESMF_INSTALL_PREFIX=/home/public/software/esmf-6.3.0[root@localhost esmf]# export ESMF_SITE=default[root@localhost esmf]# export ESMF_TESTEXHAUSTIVE=ON[root@localhost esmf]# export ESMF_NETCDF=/home/public/software/netcdf-4.3[root@localhostesmf]#export ESMF_NETCDF_INCLUDE=/home/public/software/netcdf-4.3/include[root@localhost esmf]# export ESMF_NETCDF_LIBPATH=/home/public/software/netcdf-4.3/lib [root@localhost esmf]# export ESMF_NETCDF_LIBS='-lnetcdf -lnetcdff'
 
P

pengxq13@lzu_edu_cn

New Member
Thank you! this problem have been solved like you said that the problem is the ESMF. But I have also another problem:  [guser002@login mkmapdata]$ export GRIDNAME=1x1_boulderCO
[guser002@login mkmapdata]$ export CDATE='date +150108'
[guser002@login mkmapdata]$ ./mknoocnmap.pl -p 40,255 -n $GRIDNAME

Create SCRIP grid and mapping files for a single-point
Create land SCRIP gridfile
Execute: env S_LAT=39.95 W_LON=254.95 N_LAT=40.05 E_LON=255.05 NX=1 NY=1 PTNAME=1x1_boulderCO   GRIDFILE=/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc ncl mkscripgrid.ncl
Copyright (C) 1995-2014 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.2.0
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
Create ocean SCRIP gridfile
Execute: env S_LAT=39.95 W_LON=254.95 N_LAT=40.05 E_LON=255.05 NX=1 NY=1 PTNAME=1x1_boulderCO   GRIDFILE=/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_noocean_c150108.nc IMASK=0 ncl mkscripgrid.ncl
Copyright (C) 1995-2014 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.2.0
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
Create unity mapping file between the two gridfile
Execute: env GRIDFILE1=/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_noocean_c150108.nc GRIDFILE2=/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc MAPFILE=map_1x1_boulderCO_noocean_to_1x1_boulderCO_nomask_aave_da_150108.nc  ncl /public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapdata/mkunitymap.ncl
Copyright (C) 1995-2014 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.2.0
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.

Successfully created grid/mapping files for single-point

[guser002@login mkmapdata]$ ls
createXMLEntries.pl                                                  mkunitymap.ncl            regridbatch.sh
map_1x1_boulderCO_noocean_to_1x1_boulderCO_nomask_aave_da_150108.nc  mvNimport.sh              rmdups.ncl
mkmapdata.sh                                                         PET0.RegridWeightGen.Log
mknoocnmap.pl                                                        README

[guser002@login mkmapdata]$ export CSMDATA=/public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata
[guser002@login mkmapdata]$ export ESMFBIN_PATH=/public3/home/external/gansu/guser002/software/esmf-6.3.0/bin/binO/Linux.intel.64.mpiuni.default
[guser002@login mkmapdata]$ export MY_ESMF_REGRID=/public3/home/external/gansu/guser002/software/esmf-6.3.0/bin/binO/Linux.intel.64.mpiuni.default/ESMF_RegridWeightGen
[guser002@login mkmapdata]$ export GRIDFILE=/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc
[guser002@login mkmapdata]$ ./mkmapdata.sh -r $GRIDNAME -f $GRIDFILE -t regional

./mkmapdata.sh
Script to create mapping files required by mksurfdata_map
query command is ./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5  -justvalue -options sim_year=2000 -csmdata /public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata
Using user specified scrip grid file: /public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc
Output grid resolution is 1x1_boulderCO
Machine login NOT recognized
Creating mapping file: map_0.5x0.5_AVHRR_to_1x1_boulderCO_nomask_aave_da_c150108.nc
From input grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc
For output grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc

Skipping creation of map_0.5x0.5_AVHRR_to_1x1_boulderCO_nomask_aave_da_c150108.nc as already exists
Creating mapping file: map_0.5x0.5_MODIS_to_1x1_boulderCO_nomask_aave_da_c150108.nc
From input grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_MODIS_c110228.nc
For output grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc

Skipping creation of map_0.5x0.5_MODIS_to_1x1_boulderCO_nomask_aave_da_c150108.nc as already exists
Creating mapping file: map_3x3min_LandScan2004_to_1x1_boulderCO_nomask_aave_da_c150108.nc
From input grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_LandScan2004_c120517.nc
For output grid: /public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shared/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc

Starting weight generation with these inputs:
   Source File:
/public3/home/external/gansu/guser002/model/cesm1_2_1/inputdata/lnd/clm2/mappin
gdata/grids/SCRIPgrid_3minx3min_LandScan2004_c120517.nc
   Destination File:
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc
   Weight File:
map_3x3min_LandScan2004_to_1x1_boulderCO_nomask_aave_da_c150108.nc
   Source File is in SCRIP format
   Source Grid is a global grid
   Source Grid is a logically rectangular grid
   Destination File is in SCRIP format
   Destination Grid is a regional grid
   Destination Grid is a logically rectangular grid
   Regrid Method: conserve
   Pole option: NONE
   Ignore unmapped destination points
   Output weight file in 64bit offset NetCDF file format
   Norm Type: dstarea

./mkmapdata.sh: line 106: 13372 Segmentation fault      (core dumped) ${cmd}
Error status returned from mkmapdata script


[guser002@login gen_domain_files]$ export OCNDOM=domain.ocn_noocean.nc
[guser002@login gen_domain_files]$ export ATMDOM domain.lnd.1x1_boulderCO_noocean.nc
[guser002@login gen_domain_files]$ export ATMDOM=domain.lnd.1x1_boulderCO_noocean.nc
[guser002@login gen_domain_files]$ ./gen_domain -m $MAPFILE -o $OCNDOM -l $ATMDOM

fmap   =
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapdata/map_1x1_boulderCO_noocean_to_1x1_boulderCO_nomask_aave_da_150108.n
c
fn1_out_ocn= domain.ocn.domain.ocn_noocean.nc.150108.nc
fn2_out_lnd=
domain.lnd.domain.lnd.1x1_boulderCO_noocean.nc_domain.ocn_noocean.nc.150108.nc
fn2_out_ocn=
domain.ocn.domain.lnd.1x1_boulderCO_noocean.nc_domain.ocn_noocean.nc.150108.nc
usercomment= null
eps    =   9.999999960041972E-013
fminval=   1.000000047497451E-003
fmaxval=    1.00000000000000     
set_fv_pole_yc =            0
  
input SCRIP data...
pole_fix =  F
  
input file  =
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapdata/map_1x1_boulderCO_noocean_to_1x1_boulderCO_nomask_aave_da_150108.n
c
open
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapdata/map_1x1_boulderCO_noocean_to_1x1_boulderCO_nomask_aave_da_150108.n
c
domain_a     =
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapgrids/SCRIPgrid_1x1_boulderCO_noocean_c150108.nc
domain_b     =
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc
grid_file_ocn=
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapgrids/SCRIPgrid_1x1_boulderCO_noocean_c150108.nc
grid_file_atm=
/public3/home/external/gansu/guser002/model/cesm1_2_1/models/lnd/clm/tools/shar
ed/mkmapgrids/SCRIPgrid_1x1_boulderCO_nomask_c150108.nc
n,nv,ni,nj,na,ns=            1           4           1           1           1
           1
  
output domain data...
nf =            1
create domain.ocn.domain.ocn_noocean.nc.150108.nc
write domain.ocn.domain.ocn_noocean.nc.150108.nc
(shr_sys_getenv) ERROR: no implementation of getenv for this architecture
(shr_sys_getenv) no implementation of getenv for this machine
 
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