TypeError: expected str, bytes or os.PathLike object, not NoneType

[qinchuang]

An error occurred after the task was submitted.
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType

Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
srun: error: comput1: tasks 1-2,9,11,15: Exited with exit code 1
srun: Terminating job step 27.0
slurmstepd: error: *** STEP 27.0 ON comput1 CANCELLED AT 2023-01-03T11:51:38 ***
Traceback (most recent call last):
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 126, in <module>
_main_func(__doc__)
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/mycase/case.submit", line 121, in _main_func
case.submit(job=job, no_batch=no_batch, prereq=prereq, allow_fail=allow_fail,
File "/public/home/qinch/my_cesm_sandbox/cime/scripts/Tools/../../scripts/lib/CIME/case/case_submit.py", line 185, in submit
submit_options = os.path.join(caseroot, ".submit_options")
File "/public/home/qinch/anaconda3/lib/python3.9/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
srun: error: comput1: tasks 0,3-8,10,12-14,16-55: Terminated
srun: Force Terminated job step 27.0

 

[sacks]

It looks like this is having trouble getting the caseroot. Normal usage is to run ./case.submit from within your case directory. Is that what you're doing?

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bb.cgd.ucar.edu

I would especially like to see what directory / path you're in when you run each command.

 

[qinchuang]

When I run./case.submit, the case is running. But when I run with sbatch slurm.txt, I get the error mentioned above.

 

[sacks]

I think the problem is that, in your command srun ./case.submit 1000000, the case.submit script is probably treating 1000000 as the optional caseroot argument to that script, so it thinks that you're trying to point to a directory with path 1000000, which clearly isn't a directory.