Getting Error during case build (clm 5.0)

[Anuj]

I have created case first then, created case setup and download all the required data-sets and when I proceed to build case i am getting error what should i do. Please help me this regard.
I am getting error when running the script ./case.build.

wcl@wcl:~/CLM_5_run/case/test7$ sudo ./case.build
Building case in directory /home/wcl/CLM_5_run/case/test7
sharedlib_only is False
model_only is False
Generating component namelists as part of build
Creating component namelists
Calling /home/wcl/clm5.0/cime/src/components/data_comps/datm/cime_config/buildnml
Calling /home/wcl/clm5.0/cime_config/buildnml
Calling /home/wcl/clm5.0/cime/src/components/stub_comps/sice/cime_config/buildnml
Calling /home/wcl/clm5.0/cime/src/components/stub_comps/socn/cime_config/buildnml
Calling /home/wcl/clm5.0/components/mosart//cime_config/buildnml
Running /home/wcl/clm5.0/components/cism//cime_config/buildnml
Calling /home/wcl/clm5.0/cime/src/components/stub_comps/swav/cime_config/buildnml
Calling /home/wcl/clm5.0/cime/src/components/stub_comps/sesp/cime_config/buildnml
Calling /home/wcl/clm5.0/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
Building gptl with output to file /home/wcl/CLM_5_run/CLMOutput/test7/bld/gptl.bldlog.191228-135919
Calling /home/wcl/clm5.0/cime/src/build_scripts/buildlib.gptl
Building mct with output to file /home/wcl/CLM_5_run/CLMOutput/test7/bld/mct.bldlog.191228-135919
Calling /home/wcl/clm5.0/cime/src/build_scripts/buildlib.mct
Building pio with output to file /home/wcl/CLM_5_run/CLMOutput/test7/bld/pio.bldlog.191228-135919
Calling /home/wcl/clm5.0/cime/src/build_scripts/buildlib.pio
ERROR: /home/wcl/clm5.0/cime/src/build_scripts/buildlib.pio FAILED, cat /home/wcl/CLM_5_run/CLMOutput/test7/bld/pio.bldlog.191228-135919

 

[jedwards]

You'll need to look in file /home/wcl/CLM_5_run/CLMOutput/test7/bld/pio.bldlog.191228-135919 to see what the error is. I suspect that no version of netcdf was found.

 

[Anuj]

Dear Sir,
I checked log file, i got these error. I checked for confirmation, in my machine netcdf is installed. but also getting this error.
I attached the pio.bldlog.191228-135919 file please check once.
what will be the probable solution for this. How i resolve it. Help me regarding this.

Here i am also pasted error/ failed log lines. Please check pio.bldlog.191228-135919 file once.

/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /home/wcl/clm5.0/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o
pio/CMakeFiles/pio.dir/build.make:233: recipe for target 'pio/CMakeFiles/pio.dir/piolib_mod.F90.o' failed
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
pio/CMakeFiles/pio.dir/build.make:249: recipe for target 'pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides' failed
gmake[2]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
CMakeFiles/Makefile2:88: recipe for target 'pio/CMakeFiles/pio.dir/all' failed
gmake[1]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
Makefile:86: recipe for target 'all' failed

f951: Warning: Nonexistent include directory ‘/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include’ [-Wmissing-include-dirs]
f951: Fatal Error: Reading module ‘piodarray’ at line 1600 column 3: Unexpected EOF
compilation terminated.
gmake[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1
gmake[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2
gmake[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2
gmake: *** [all] Error 2
ERROR: f951: Warning: Nonexistent include directory /home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory /home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include [-Wmissing-include-dirs]

f951: Fatal Error: Reading module piodarray at line 1600 column 3: Unexpected EOF
compilation terminated.
gmake[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1
gmake[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2
gmake[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2
gmake: *** [all] Error 2

 

[majun]

it seems like the problem of "gmake", maybe you could replace 'make' with 'gmake' in config_machines. xml <GMAKE>make</GMAKE>

another reason maybe the installation of mpich is wrong